- Mohammadreza Ghahramani, Omid Bavi, "A comparative analysis of coupled versus segregated solver strategies for coupled reaction-diffusion-mechanics systems", COMPUTERS and MATHEMATICS WITH APPLICATIONS, vol. 213, 2026
- Mohammad Hossein Heydari, M. A. Zaky, Rezvan Zarei, Omid Bavi, "Numerical solution of a class of nonlinear singular tempered fractional integro-differential equations", APPLICABLE ANALYSIS, vol. 0, 2026
- Navid Sokhandani, Omid Bavi, Seyed Mojtaba Zebarjad, Ali Reza Setoodeh, "Structure-Property Correlations in Graphene-Based Epoxy Nanocomposites and Their Impact on Tribological Performance", JOURNAL OF APPLIED POLYMER SCIENCE, vol. 143, 2026
- Maryam Rahbar, Omid Bavi, Shima Pashangeh, Morteza Alizadeh, "Effect of reinforcement type, size, and content on bonding behavior of aluminum-based composites fabricated by cold roll bonding", CERAMICS INTERNATIONAL, vol. 52, 2026
- A.M. Maleki, M. Hosseininia, Mohammadreza Ghahramani, Omid Bavi, Mohammad Hossein Heydari, "Personalized prognosis of glioblastoma via fractional-order/biomechanical modeling: Bridging anomalous diffusion, continuum mechanics, and MRI data", Results in Engineering, vol. 29, 2026
- Farshad Rostami khaje langi, Delara Mohammad-Aghaie, Omid Bavi, "Molecular dynamics deciphers drug-dependent stability in therapeutic liposomes", CHEMISTRY AND PHYSICS OF LIPIDS, vol. 274, 2026
- Mohammadreza Ghahramani, Omid Bavi, "Biomechanical modeling of glioblastoma progression: a comprehensive review from classic mathematical frameworks to data-driven strategies", Biomechanics and Modeling in Mechanobiology, vol. 25, 2026
- Navid Sokhandani, Omid Bavi, Seyed Mojtaba Zebarjad, AliReza Setoodeh, "Thermal Decomposition Kinetics and Viscoelastic Properties of Epoxy Nanocomposites: Comparative Study of Graphene, GO, and rGO Nanoparticle Effects", POLYMER COMPOSITES, vol. 47, 2026
- Masoumehossadat Hosseini, Safura Jokar, Hooman Hafezi, Omid Bavi, Khosrow Jadidi, Fatemeh Tavakoli, Hossein Sadeghi Tafti, Ali Hossein Amini, Hamid Arvinnezhad, "Design of chiral 2-oxazoline-based amino acid bioConjugates as anticancer agents: Synthesis, in vitro anticancer activity, ADMET prediction with molecular docking and molecular dynamic simulation insights", ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, vol. 771, 2025
- Navid Sokhandani, Omid Bavi, SeyedMojtaba Zebarjad, Ali Reza Setoodeh, "Experimental investigation and semi-empirical modeling of mechanical behavior in Gr, GO, and rGO nanocomposites", Results in Engineering, vol. 26, 2025
- Omid Bavi, Mona Khafaji, Navid Bavi, "Nanomaterial and nanostructures for cancer and pathogenic infection diagnosis and therapy", Frontiers in Nanotechnology, vol. 7, 2025
- MohammadReza Jamali, Omid Bavi, "Aquaporin channels in desalination: Mechanical properties and operational load analysis", DESALINATION, vol. 594, 2025
- Mohammad Hossein Heydari, Fatemeh Heydari gharaie, Omid Bavi, M. Bayram, "Logarithmic Bernstein functions for fractional Rosenau-Hyman equation with the Caputo-Hadamard derivative", Results in Physics, vol. 67, 2024
- Alireza Shadloo jahromi, Masoud Kharati-Koopaee, Omid Bavi, "Friction factor calculation by molecular-continuum hybrid approach for flow through superhydrophobic nanochannels", INTERNATIONAL COMMUNICATIONS IN HEAT AND MASS TRANSFER, vol. 159, 2024
- Mohammad Ali Dashti, Delara Mohammad-Aghaie, Omid Bavi, "Disrupting SARS-CoV-2: molecular dynamics insights into the role of human ?-defensin 2 and ?-defensin 5 peptides in membrane structure alteration", Chemical Physics Impact, vol. 9, 2024
- Faezeh Ejehi, Mohaddeseh Vafaiee, Omid Bavi, Vahid Mahmoudi Maymand, Elham Asadian, Raheleh Mohammadpour, "Asymmetric flexible graphene oxide papers for moisture-driven actuators and water level indicators", AEJ - Alexandria Engineering Journal, vol. 107, 2024
- Mona Khafaji, Omid Bavi, Manoucher Vossoughi, "Plasmomagnetic hybrid gold nanostructures as multifunctional nanocarriers for drug delivery, MRI contrast, and photothermal therapy of drug-resistant cancer cells", JOURNAL OF DRUG DELIVERY SCIENCE AND TECHNOLOGY, vol. 101, 2024
- Zahra Emamgholipour, Sara Dabirian, Fariba Peytam, Ebrahim Saeedian Moghadam, Loghman Firoozpour, Maliheh Safavi, Seyed Esmaeil Sadat-Ebrahimi, Maliheh Barazandeh Tehrani, Mohsen Amini, Ali Khalaj, Safura Jokar, Omid Bavi, Hamid Reza Bijanzadeh, Alireza Foroumadi, "Synthesis, biological evaluation, and in silico study of novel coumarin-quinazoline analogs as potential Anti-Angiogenesis agents", Results in Chemistry, vol. 11, 2024
- Mohammadreza Ghahramani, Omid Bavi, "Heterogeneous biomechanical/mathematical modeling of spatial prediction of glioblastoma progression using magnetic resonance imaging-based finite element method", COMPUTER METHODS AND PROGRAMS IN BIOMEDICINE, vol. 257, 2024
- Ibrahim Ghoytasi, Omid Bavi, Mohammad Reza Kaazempur Mofrad, Reza Naghdabadi, "An in-silico study on the mechanical behavior of colorectal cancer cell lines in the micropipette aspiration process", COMPUTERS IN BIOLOGY AND MEDICINE, vol. 178, 2024
- Masoumeh Hosseininia, Omid Bavi, Mohammad Hossein Heydari, Dumitru Baleanu, "A new application of fractional derivatives for predicting human glioblastoma multiforme tumor growth", ENGINEERING ANALYSIS WITH BOUNDARY ELEMENTS, vol. 165, 2024
- Mahshid Kiani, Safura Jokar, Leila Hassanzadeh, Hossein Behnammanesh, Omid Bavi, Davood Beiki, Majid Assadi, "Recent Clinical Implications of FAPI", CLINICAL NUCLEAR MEDICINE, vol. 49, 2024
- Omid Bavi, Masoumeh Hosseininia, Mohammad Hossein Heydari, "A mathematical model for precise predicting microbial propagation based on solving variable?order fractional diffusion equation", MATHEMATICAL METHODS IN THE APPLIED SCIENCES, vol. 46, 2023
- Fatemeh Ghadirian, Hossein Abbasi, Omid Bavi, Aboutorab Naeimabadi, "How living cells are affected during the cold atmospheric pressure plasma treatment", FREE RADICAL BIOLOGY AND MEDICINE, vol. 205, 2023
- Mohammad Mehdi Mohammadi, Omid Bavi, Yousef Jamali, "DNA sequencing via molecular dynamics simulation with functionalized graphene nanopore", JOURNAL OF MOLECULAR GRAPHICS and MODELLING, vol. 122, 2023
- Omid Bavi, M. Hosseininia, Mojtaba Hajishamsae, Mohammad Hossein Heydari, "Glioblastoma multiforme growth prediction using a Proliferation-Invasion model based on nonlinear time-fractional 2D diffusion equation", CHAOS SOLITONS and FRACTALS, vol. 170, 2023
- Vahid Mahmoudi Maymand, Omid Bavi, Abbas Karami, "Probing the mechanical properties of ORF3a protein, a transmembrane channel of SARS-CoV-2 virus: Molecular dynamics study", CHEMICAL PHYSICS, vol. 569, 2023
- Omid Bavi, Zijing Zhou, Navid Bavi, S. Mehdi Vaez Allaei, Charles D. Cox, B. Martinac, "Asymmetric effects of amphipathic molecules on mechanosensitive channels", Scientific Reports, vol. 12, 2022
- Omid Bavi, M. Ozmaeian, Mohammad Hossein Heydari, "Editorial: Biomechanics and Mechanobiology", Frontiers in Mechanical Engineering, vol. 8, 2022
- Zahra Nikfarjam, Farshid Zargari, Alireza Nowroozi, Omid Bavi, "Metamorphosis of prostate specific membrane antigen (PSMA) inhibitors", Biophysical Reviews, vol. 14, 2022
- Mohammad Mehdi Mohammadi, Omid Bavi, "DNA sequencing: an overview of solid-state and biological nanopore-based methods", Biophysical Reviews, vol. 14, 2022
- Mona Khafaji, Omid Bavi, Masoud Zamani, "Gold-based hybrid nanostructures: more than just a pretty face for combinational cancer therapy", Biophysical Reviews, vol. 14, 2022
- Omid Bavi, M. Hosseininia, Mohammad Hossein Heydari, N. Bavi, "SARS-CoV-2 rate of spread in and across tissue, groundwater and soil: A meshless algorithm for the fractional diffusion equation", ENGINEERING ANALYSIS WITH BOUNDARY ELEMENTS, vol. 138, 2022
- Mohammad Hossein Heydari, Omid Bavi, "An optimization method based on the Legendre wavelets for 3D rotating, squeezing and stretching magnetohydrodymanic flow in a channel with porous wall", ENGINEERING WITH COMPUTERS, vol. 38, 2022
- Mohammad Hossein Heydari, Omid Bavi, "An efficient wavelet method for nonlinear problems arising in heat transfer", ENGINEERING WITH COMPUTERS, vol. 38, 2022
- Hamed Badjian, Ali Reza Setoodeh, Omid Bavi, Timon Rabczuk, "Enhanced mechanical properties of epoxy-based nanocomposites reinforced with functionalized carbon nanobuds", APPLIED PHYSICS A-MATERIALS SCIENCE and PROCESSING, vol. 127, 2021
- Mohammad Hossein Heydari, Omid Bavi, "An optimal variational iteration method for investigating the physical behavior of quasi-steady squeezing flow confined between parallel rigid walls", PHYSICA SCRIPTA, vol. 96, 2021
- Alireza Shadloo jahromi, Masoud Kharati-Koopaee, Omid Bavi, "Molecular dynamics simulation of fluid flow through nanochannels consisting of different superhydrophobic patterns", INTERNATIONAL COMMUNICATIONS IN HEAT AND MASS TRANSFER, vol. 124, 2021
- Hamed Badjian, Ali Reza Setoodeh, Manouchehr Salehi, Omid Bavi, "MICRO/MACROMECHANICAL ANALYSIS AND OPTIMIZATION OF THE FLEXURAL STRENGTH OF LaRC-SI/PmPV/CNT NANOCOMPOSITE SQUARE PLATE USING GENETIC ALGORITHM", Composites: Mechanics, Computations, Applications, vol. 12, 2021
- Omid Bavi, Farhad Ghadak, "Possibility of making aerophobic surfaces by nanoprotrusions: an investigation of atomic-scale friction of the air-solid interfaces", PHYSICAL CHEMISTRY CHEMICAL PHYSICS, vol. 23, 2021
- Ali Rasouli, Yousef Jamali, Emad Tajkhorshid, Omid Bavi, Hossein Nejat Pishkenari, "Mechanical properties of ester- and ether-DPhPC bilayers: A molecular dynamics study", Journal of the Mechanical Behavior of Biomedical Materials, vol. 117, 2021
- Zahra Nikfarjam, Omid Bavi, Saeed K. Amini, "Potential effective inhibitory compounds against Prostate Specific Membrane Antigen (PSMA): A molecular docking and molecular dynamics study", ARCHIVES OF BIOCHEMISTRY AND BIOPHYSICS, vol. 699, 2021
- R. Roohi, Mohammad Hossein Heydari, Omid Bavi, H. Emdad, "Chebyshev polynomials for generalized Couette flow of fractional Jeffrey nanofluid subjected to several thermochemical effects", ENGINEERING WITH COMPUTERS, vol. 37, 2021
- Omid Bavi, "Cell membrane mechanics and mechanosensory transduction", Current Topics in Membranes, vol. 86, 2020
- Shaghayegh Bahari, Reza Davarnejad, Omid Bavi, Seyed Vahid Mohammadi, "Osmotic water permeability of aquaporin-1 under radial tensile and compressive stimuli", DESALINATION, vol. 492, 2020
- Safura Jokar, Mostafa Erfani, Omid Bavi, Saeedeh Khazaei, Mohammad Sharifzadeh, Malihe Hajiramezanali, Davood Beiki, Amir Shamloo, "Design of peptide-based inhibitor agent against amyloid-? aggregation: Molecular docking, synthesis and in vitro evaluation", BIOORGANIC CHEMISTRY, vol. 102, 2020
- Alireza Shadloo jahromi, Omid Bavi, Mohammad Hossein Heydari, Masoud Kharati-Koopaee, Zakieh Avazzadeh, "Dynamics of respiratory droplets carrying SARS-CoV-2 virus in closed atmosphere", Results in Physics, vol. 19, 2020
- Alireza Shadloo jahromi, Masoud Kharati-Koopaee, Omid Bavi, "Friction factor calculation in nanochannels comprising different wall hydrophobicities and superhydrophobic structures: Molecular dynamic simulations", INTERNATIONAL COMMUNICATIONS IN HEAT AND MASS TRANSFER, vol. 117, 2020
- Mojtaba Hajishamsaei, Ahmadreza Pishevar, Omid Bavi, Madjid Soltani, "A novel in silico platform for a fully automatic personalized brain tumor growth", MAGNETIC RESONANCE IMAGING, vol. 68, 2020
- Mona Khafaji, Masoud Zamani, Mortaza Golizadeh, Omid Bavi, "Inorganic nanomaterials for chemo/photothermal therapy: a promising horizon on effective cancer treatment", Biophysical Reviews, vol. 11, 2019
- Safura Jokar, Saeedeh Khazaei, Hossein Behnammanesh, Amir Shamloo, Mostafa Erfani, Davood Beiki, Omid Bavi, "Recent advances in the design and applications of amyloid-? peptide aggregation inhibitors for Alzheimer's disease therapy", Biophysical Reviews, vol. 11, 2019
- Boris Martinac, Navid Bavi, Adam D. Martinac, Yoshitaka Nakayama, Yury A. Nikolaev, Pietro Ridone, Paul R. Rohde, Omid Bavi, "Tuning ion channel mechanosensitivity by asymmetry of the transbilayer pressure profile", Biophysical Reviews, vol. 10, 2018
- Navid Bavi, Adam D. Martinac, D. Marien Cortes, Omid Bavi, Pietro Ridone, Takeshi Nomura, Adam P. Hill, Boris Martinac, Eduardo Perozo, "Structural Dynamics of the MscL C-terminal Domain", Scientific Reports, vol. 7, 2017
- Adam D. Martinac, Navid Bavi, Omid Bavi, Boris Martinac, "Pulling MscL open via N-terminal and TM1 helices: A computational study towards engineering an MscL nanovalve", PLoS One, vol. 12, 2017
- N. Bavi, Omid Bavi, A. P. Hill, Y. Jamali, B. Martinac, R. Naghdabadi, M. Vossoughi, "Nanomechanical properties of MscL alpha helices A steered molecular dynamics study", Channels, vol. 11, 2017
- Navid Bavi, D. Marien Cortes, Charles D. Cox, Paul R. Rohde, Weihong Liu, Joachim W. Deitmer, Omid Bavi, Pavel Strop, Adam P. Hill, Douglas Rees, Ben Corry, Eduardo Perozo, Boris Martinac, "The role of MscL amphipathic N terminus indicates a blueprint for bilayer-mediated gating of mechanosensitive channels", Nature Communications, vol. 7, 2016
- Omid Bavi, Yousef Jamali, Reza Naghdabadi, Manouchehr Vossoughi, "The Combined Effect of Hydrophobic Mismatch and Bilayer Local Bending on the Regulation of Mechanosensitive Ion Channels", PLoS One, vol. 11, 2016
- Omid Bavi, Charles Cox, Yousef Jamali, Manouchehr Vossoughi, Reza Naghdabadi, Boris Martinac, "Influence of Global and Local Membrane Curvature on Mechanosensitive Ion Channels A Finite Element Approach", Membranes, vol. 6, 2016
- Navid Bavi, Yoshitaka Nakayama, Omid Bavi, C. D. Cox, Boris Martinac, Q.-H. Qin, "Biophysical implications of lipid bilayer rheometry for mechanosensitive channels", PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA, vol. 111, 2014
- Omid Bavi, Yousef Jamali, Reza Naghdabadi, Manouchehr Vossoughi, "The effect of local bending on gating of MscL using a representative volume element and finite element simulation", Channels, vol. 8, 2014
- Omid Bavi, Navid Bavi, Mohammad Shishesaz, "Geometrical Optimization of the Overlap in Mixed Adhesive Lap Joints", JOURNAL OF ADHESION, vol. 89, 2013
- محمدرضا قهرماني, اميد باوي, "پيش بيني رشد تومورهاي مغزي با استفاده از مدل سازي تركيبي بيومكانيك-رياضي", , شماره 27, 1403
- محمدمهدي محمدي, اميد باوي, يوسف جمالي, "تعيين توالي DNA با استفاده از نانومنفذ عامل دار گرافين: مطالعه ديناميك مولكولي", مهندسي مكانيك دانشگاه تبريز, شماره 52, 1401